FastQCFastQC Report
Wed 8 May 2024
EGAF00007962570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511742
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC11150.2178832302214788No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10600.20713562693701124No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6640.12975288328884477No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6490.12682171875671727No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6130.1197869238796112No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5780.11294753997131367No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5500.10747603284467565No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5430.10610815606301614No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5360.10474027928135661No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5170.1010274708739951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)