FastQCFastQC Report
Wed 8 May 2024
EGAF00007962571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511742
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41880.8183811373700028No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11110.2171015863462448No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11060.2161245315022023No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10980.21456124375173424No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9820.19189357136994814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6910.1350289794466743No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6500.12701712972552576No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6290.12291349938054724No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.1186144580667602No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5850.11431541675297319No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5650.11040719737680316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5480.10708521090705862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)