FastQCFastQC Report
Wed 8 May 2024
EGAF00007962572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534886
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC11230.20995127933802715No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10470.19574264422699417No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7690.14376895263663658No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6720.12563424729755499No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6320.11815601829174814No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6150.11497777096428025No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5900.11030387783565096No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5530.10338651600527962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)