FastQCFastQC Report
Wed 8 May 2024
EGAF00007962573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534886
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA11850.22154253429702778No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11640.2176164640689792No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11220.20976432361288197No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9890.18489921216857425No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9720.18172096484110634No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7430.13890810378286214No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7330.13703854653141043No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6800.12712989309871636No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6140.11479081523913506No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6120.11441690378884471No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6120.11441690378884471No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5590.10450825035615066No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5560.10394738318071513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)