FastQCFastQC Report
Wed 8 May 2024
EGAF00007962574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520304
Total Bases22.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC11020.21179925581967465No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10480.2014207078938467No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7140.137227467019281No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6260.12031427780682064No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6200.11916110581506197No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5870.1128186598603893No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5730.11012792521295242No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5600.10762938589747531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)