FastQCFastQC Report
Wed 8 May 2024
EGAF00007962575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520304
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40860.7853101263876503No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11280.21679633445062887No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11270.21660413911866908No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11070.21276023247947357No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10960.21064608382791597No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6890.13242258372028662No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6740.12953965374088994No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6490.1247347704418955No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6290.12089086380269996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5890.11320305052430887No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5730.11012792521295242No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5680.10916694855315354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)