FastQCFastQC Report
Wed 8 May 2024
EGAF00007962582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522483
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20680.3958023514640667No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT18720.35828916921698883No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14260.2729275402261892No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13310.2547451304635749No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12000.22967254436986467No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG11820.22622745620431672No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10800.20670528993287818No Hit
ACGGCTGAAGCACAGCTGGCAGCCGATGTGGTGCATTTTCAGAC9770.18699172987446483No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9500.18182409762614285No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9330.1785704032475698No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9240.17684785916479578No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA9190.17589089022992135No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG8820.1688093201118505No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8760.1676609573900012No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8530.1632589002895788No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT8040.15388060472780934No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7770.14871297247948737No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7710.14756460975763805No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG7570.14488509673998964No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7410.14182279614839144No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7340.14048303963956724No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6970.1334014695214964No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6740.128999412421074No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6540.12517153668157624No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6410.12268341745090271No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6270.12000390443325429No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5680.10871167100173593No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5580.10679773313198708No Hit
GTTTACCGGCAGTTCGCTCACGCCGTGTTTAGTGGAGTCACGCA5360.10258706981853954No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5330.10201288845761489No Hit
AGCACCTGCAACGGTACCGGTGCCGTTGTCGCCCTGCGCGATGC5330.10201288845761489No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5280.10105591952274046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)