FastQCFastQC Report
Wed 8 May 2024
EGAF00007962583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522483
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20560.39350562602036815No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG19460.37245230945313057No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19080.36517934554808484No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15350.29378946300645187No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14130.27043942099551566No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13860.2652717887471937No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13080.2503430733631525No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12110.2317778760265884No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12100.23158648223961356No Hit
GCTAGCCGTGAACATTTCGCGATGCAGGGTC10570.20230323283245577No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10250.1961786316492594No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9640.18450361064379128No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9270.17742204052572044No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA9160.1753167088689967No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8710.16670398845512677No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8600.16459865679840302No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC8530.1632589002895788No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7930.15177527307108557No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG7600.1454592781009143No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC7450.14258837129629098No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7350.1406744334265421No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7310.13990885827864255No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7210.1379949204088937No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6970.1334014695214964No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6760.12938219999502376No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6720.12861662484712422No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6350.12153505472905339No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6210.11885554171140497No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5740.10986003372358527No Hit
ATGACTCAGCGTAACGAGAAAAGCATGGGTA5420.10373543254038889No Hit
TGGCAGGGTCTGAGCCTGGATGATGGTCAGG5410.10354403875341399No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5290.10124731330971534No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5260.10067313194879067No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5260.10067313194879067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)