FastQCFastQC Report
Wed 8 May 2024
EGAF00007962585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499847
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40830.8168499560865625No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18990.37991625437383836No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18870.3775155197490432No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18610.372313928061987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15430.3086944605049145No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13530.27068282894565737No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13200.26408080872747064No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12630.25267731925969344No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11530.23067058519907094No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10640.21286513673183993No Hit
GCTAGCCGTGAACATTTCGCGATGCAGGGTC10530.21066446332577768No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9420.18845766804642222No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8540.17085228079792417No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8370.1674512400794643No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA8280.16565068911086794No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC8020.1604490974238117No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7930.15864854645521528No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG7290.14584462845630763No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7180.14364395505024538No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7170.14344389383151246No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT6930.13864242458192208No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6880.13764211848825741No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6790.135841567519661No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6740.13484126142599637No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6630.1326405880199341No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6090.12183728220835575No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6030.12063691489595815No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5850.11703581295876538No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5720.11443501711523726No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5120.10243134399126133No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5080.1016310991163296No Hit
ATGACTCAGCGTAACGAGAAAAGCATGGGTA5040.10083085424139786No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5000.10003060936646614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)