FastQCFastQC Report
Wed 8 May 2024
EGAF00007962589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507131
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39870.7861873953672719No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19820.3908260390313351No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG19280.38017790275096575No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18890.37248758210403227No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14120.2784290449607695No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13500.26620340700923434No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13350.26324559137579834No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12940.2551608953110735No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12140.23938587859941513No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10810.21315991331628314No Hit
GCTAGCCGTGAACATTTCGCGATGCAGGGTC10780.212568350189596No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10030.19777927202241627No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9020.17786331342394768No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8790.1733279961193459No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8670.17096174361259714No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC8380.165243300054621No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA7930.15636985315431318No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7500.14789078167179684No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG7370.14532734145615234No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7250.14296108894940363No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC7150.1409892118604463No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6820.13448201746688726No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6780.13369326663130435No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6660.13132701412455558No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6650.13112982641565984No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6560.1293551370355983No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6500.12817201078222393No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6240.12304513035093496No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5880.11594637283068872No Hit
TGGCAGGGTCTGAGCCTGGATGATGGTCAGG5450.10746730134817237No Hit
ATGACTCAGCGTAACGAGAAAAGCATGGGTA5350.10549542425921507No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5300.10450948571473642No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5240.10332635946136205No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5180.1021432332079877No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5110.10076291924571758No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5090.10036854382792612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)