FastQCFastQC Report
Wed 8 May 2024
EGAF00007962591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549671
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20880.3798635911299668No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11010.20030163497801412No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10570.19229684665918342No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9990.18174508023890656No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9000.16373430652153742No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8380.15245483207227598No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8290.1508174890070606No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8280.15063556199981445No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8270.15045363499256828No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8190.14899821893459905No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7070.12862239412302995No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.1253477079925992No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6770.12316458390564539No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6470.11770677368826081No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6420.11679713865203004No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6230.11334052551435314No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5990.10897427734044547No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5860.10660922624624548No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5780.10515381018827626No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5720.10406224814479934No Hit

[OK]Adapter Content

Adapter graph