FastQCFastQC Report
Wed 8 May 2024
EGAF00007962593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527726
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42800.8110269344318832No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20470.3878906856967442No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10540.19972485721757122No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10480.19858790357117137No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9940.18835532075357286No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8190.15519417273357766No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7930.15026737359917836No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7610.14420362081837923No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7530.14268768262317943No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7440.1409822521535797No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6840.12961271568958133No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6630.1256333779271819No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6330.11994860969518273No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6210.11767470240238306No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6160.11672724103038319No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5980.11331638009118368No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5390.1021363359015853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5380.10194684362718533No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5310.10062039770638552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)