FastQCFastQC Report
Wed 8 May 2024
EGAF00007962595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549372
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21070.38352882928143406No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11600.21115018603059493No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11230.20441522320030875No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10550.1920374536743773No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9330.1698302789366768No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8410.15308388487218133No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8300.15108159862533946No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8200.1492613384009378No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8100.14744107817653612No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8060.14671297408677544No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7440.13542736069548503No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7150.13014860604472017No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7130.12978455399983982No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6870.12505187741639545No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6540.1190450186758699No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6230.11340221198022468No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6140.11176397777826319No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5720.10411888483577612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)