FastQCFastQC Report
Wed 8 May 2024
EGAF00007962597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533855
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42190.790289498084686No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20360.38137696565546825No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11100.20792162665892425No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10510.19686993659326968No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9410.1762650907081511No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8520.15959389721928238No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8070.15116464208446112No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7900.14798025681130644No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7770.14554513866124696No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7400.13861441777261616No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7240.13561734928023528No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6600.12362907531071171No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6470.12119395716065223No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6360.11913347257214038No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.11576177051821188No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6110.11445055305279524No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5810.10883104962958108No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5710.10695788182184301No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5550.10396081332946212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)