FastQCFastQC Report
Wed 8 May 2024
EGAF00007962600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505634
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG57981.1466792185652073No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT33340.6593702164015869No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC32920.6510638129556161No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC25320.5007574648856683No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18170.3593508347935463No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17970.35539540458117924No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15880.31406115886194363No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG15430.3051614408841178No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC15320.3029859542673159No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14240.2816266311205338No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12680.25077427546407083No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12360.24444558712428355No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11330.22407512153059328No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG11030.2181419762120427No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG10450.20667122859617826No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10360.2048912850006131No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG10190.20152916932010112No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10070.1991559111926809No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG9190.18175201825826587No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC8900.17601664445033363No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8490.1679080125149812No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG8460.16731469798312615No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG8380.1657325258981793No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8050.15920606604777368No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7970.15762389396282686No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC7890.15604172187788007No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7620.15070189109118454No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7370.14575760332572574No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC6740.13329799815676951No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6570.12993588247625754No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT6490.12835371039131072No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG6450.1275626243488373No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6420.12696930981698223No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6180.12222279356214177No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6100.12064062147719497No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6100.12064062147719497No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6020.11905844939224815No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5940.11747627730730134No Hit
AGTTGGCAGCTGTTCATCACCGCTGTCGGAACGGATGTAGGTTT5920.11708073428606462No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5870.11609187673297286No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5560.10996095990380393No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG5500.10877433084009382No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5390.10659884422329195No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5310.10501667213834512No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5160.10205009947906983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)