FastQCFastQC Report
Wed 8 May 2024
EGAF00007962601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505634
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA73001.4437320275139724No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG55101.0897210235071217No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43220.8547684688925191No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA36780.7274036160543002No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA33740.667281076826321No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC18860.37299706902621266No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA17190.3399692267529478No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG16790.33205836632821367No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG15860.3136656158407069No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC15020.2970528089487653No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12830.25374084812334613No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12550.2482032458260323No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11880.23495255461460268No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11820.23376592555089254No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11760.2325792964871824No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11310.22367957850935657No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10830.21418654599967565No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA10500.20766008614927No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG9840.19460716644845877No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA9600.1898606501936183No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9600.1898606501936183No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9440.18669630602372467No Hit
GAACCGATCTACGCTACCATCGACGACCTGG9080.17957653164146398No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATC8730.17265452876982165No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8720.1724567572592033No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8540.16889687006807294No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7940.15703057943097182No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC7650.15129520562303958No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA7150.14140663009212195No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7030.13903337196470175No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6800.13448462722047963No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6750.13349576966738785No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6530.12914479643378413No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6430.1271670813276006No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC6380.12617822377450882No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6350.12558490924265378No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6290.12439828017894365No Hit
GGCAAACGTCCGTCTATTGGTAACCTGGAAC6190.12242056507276015No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5960.11787182032853803No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5920.11708073428606462No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5660.11193867500998746No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5490.10857655932947548No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5400.10679661573391029No Hit
CTGGACGCACTGGGCAACGATCGCATCGCGT5300.10481890062772677No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5260.10402781458525336No Hit
AAACGTGTCTCCGGCTTCGACGTGGTACTGA5230.10343450005339831No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5210.1030389570321616No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5170.1022478709896882No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5080.10046792739412302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)