FastQCFastQC Report
Wed 8 May 2024
EGAF00007962602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525065
Total Bases23.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG59401.1312885071372116No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT35340.6730595259634521No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC33630.6404921295458658No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26170.4984144820165123No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG19620.3736680220544123No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18300.34852827745136317No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG17010.32395989068020153No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16900.3218649119632807No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC16260.3096759448830145No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15660.29824878824526485No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA13970.2660622970489368No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12280.23387580585260875No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12260.23349490063135042No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11510.21921095483416342No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG11410.2173064287278718No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG10990.20930741908144704No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG10250.19521392589488923No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9730.18531039014217288No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG9420.1794063592126689No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC9300.177120927885119No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG8830.16816965518554847No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8760.16683648691114433No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8690.16550331863674023No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8260.15731385637968634No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG8260.15731385637968634No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8020.15274299372458647No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG8020.15274299372458647No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC7700.14664851018445335No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT7300.13903040575928693No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG7190.1369354270423662No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC6780.1291268700065706No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG6770.12893641739594144No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6650.12665098606839154No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6330.1205565025282584No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6260.11922333425385429No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6200.11808061859007932No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6170.11750926075819183No Hit
AGTTGGCAGCTGTTCATCACCGCTGTCGGAACGGATGTAGGTTT6030.11484292420938359No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6030.11484292420938359No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5950.11331930332435032No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG5850.1114147772180587No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC5840.11122432460742956No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5660.10779617761610467No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5450.1037966727928923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)