FastQCFastQC Report
Wed 8 May 2024
EGAF00007962605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511489
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA73981.446365415483031No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG55651.0879999374375597No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40920.8000172046710682No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA38080.7444930389509843No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA32800.6412650125418142No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC18120.35425981790419736No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA17790.3478080662536242No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG17120.33470905532670303No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG16190.3165268461296333No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC15810.30909755635018543No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12360.24164742545783No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11850.2316765365433079No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11780.23030798316288326No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11450.22385623151231016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11430.22346521626076024No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11370.2222921705061106No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11220.21935955611948643No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA10760.21036620533383907No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10440.20410996130904085No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10170.1988312554131174No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG10100.19746270203269278No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA9500.18573224448619619No Hit
GAACCGATCTACGCTACCATCGACGACCTGG9170.17928049283562306No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9060.17712990895209868No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATC8910.17419729456547453No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8480.16579046665715194No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8350.1632488675220777No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC7530.14721724220853233No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7300.14272056681570866No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7010.13705084566823528No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6930.13548678466203573No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6860.13411823128161113No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6830.1335317084042863No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6730.13157663214653686No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA6710.13118561689498698No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC6660.13020807876611226No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6310.12336531186398925No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6050.11828211359384073No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5900.11534949920721659No Hit
GGCAAACGTCCGTCTATTGGTAACCTGGAAC5880.1149584839556667No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5820.11378543820101703No Hit
AAACGTGTCTCCGGCTTCGACGTGGTACTGA5580.1090932551824184No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5470.10694267129889401No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5450.10655165604734412No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5420.1059651331700193No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5390.10537861029269446No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5360.10479208741536963No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5200.10166396540297054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)