FastQCFastQC Report
Wed 8 May 2024
EGAF00007962606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496855
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23950.4820319811615059No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22990.46271044872246436No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19650.3954876171116322No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16870.33953567942357427No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16530.332692636684747No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13820.27814956073703595No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12170.24494067685743326No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11310.22763180404745853No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11030.22199635708607138No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10870.21877610167956446No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10380.208914069497137No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9960.20046089905505632No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9680.19482545209366917No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9550.19220899457588228No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8180.16463555765766671No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8120.16342796188022662No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7980.16061023839953306No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7910.1592013766591863No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7130.143502631552465No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6910.13907478036851798No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6830.1374646526652645No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6430.1294140141489972No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6290.1265962906683036No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6170.12418109911342343No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5970.12015577985528976No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5810.11693552444878284No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5630.11331273711646256No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5560.11190387537611576No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5450.10968994978414225No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5380.10828108804379548No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5090.10244437511950166No Hit
GTTCGGCAGTACCGGACGTTCGCCTTTAACGTCCATACGGAACT5050.10163931126787494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)