FastQCFastQC Report
Wed 8 May 2024
EGAF00007962607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496855
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31780.6396232301174387No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23720.47740286401465215No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19090.3842167231888579No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18450.3713357015628302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17810.3584546799368025No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14940.3006913485825845No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13350.2686900604804219No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12980.2612432198528746No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12920.26003562407543446No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12380.2491672620784736No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11880.23910396393313943No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11170.22481408056676494No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11080.22300268690060482No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10480.2109267291262038No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9780.19683811172273602No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9620.19361785631622908No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9590.19301405842750902No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9560.19241026053878899No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8880.17872417506113453No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8300.16705074921254692No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8250.1660444193980135No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7760.15618238721558603No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7590.15276086584617243No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6940.13967857825723803No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6780.1364583228507311No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6730.1354519930361977No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6710.13504946111038432No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6330.12740135451993037No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6320.1272000885570237No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6000.12075957774400983No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5780.1163317265600628No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5730.11532539674552937No Hit
GTCGCCGACAACGAAACCATCTCCAAACTGC5170.10405450282275513No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5130.1032494389711284No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5010.1008342474162482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)