FastQCFastQC Report
Wed 8 May 2024
EGAF00007962608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471735
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22970.4869259223928689No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21500.45576435922710845No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18300.387929663900283No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16810.3563441338887299No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15640.33154207340985936No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13300.2819379524521182No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11330.24017721814154133No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10880.23063796411120652No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10580.22427846142431662No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9980.21155945605053683No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9760.2068958207468176No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9750.20668383732392126No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8840.1873933458403553No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8590.18209376026794705No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7800.165347069859137No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7730.16386318589886273No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7720.16365120247596637No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7190.1524160810624609No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7000.14838839602743065No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6900.14626856179846737No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6600.13990905911157747No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6000.1271900537377977No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG5670.12019460078221884No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5610.11892270024484086No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5480.11616691574718857No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5440.11531898205560326No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5410.11468303178691426No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5350.11341113124953628No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5350.11341113124953628No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5330.11298716440374362No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5270.11171526386636564No Hit
GTTCGGCAGTACCGGACGTTCGCCTTTAACGTCCATACGGAACT5050.1070516285626464No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC4860.10302394352761614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)