FastQCFastQC Report
Wed 8 May 2024
EGAF00007962609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471735
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39490.8371225370176052No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29720.6300147328478913No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21460.45491642553552314No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17770.37669454248677753No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17660.3743627248349179No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17140.3633395868443088No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14290.3029243113188549No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12790.2711267978844054No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12730.26985489734702744No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11380.24123713525602297No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11290.23932928444995602No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11040.23402969887754776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10830.22957804699672485No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10800.22894209672803587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9510.20159623517440936No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8890.18845326295483694No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8670.1837896276511177No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8420.17849004207870944No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8350.17700615811843515No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8080.17128260570023424No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7650.16216731851569208No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7030.14902434629611966No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6960.14754046233584533No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6910.1464805452213637No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6240.1322776558873096No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6110.12952187138965732No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5790.1227384018569748No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5770.12231443501118212No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5650.11977063393642617No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5550.11765079970746288No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5530.11722683286167021No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5360.11362311467243262No Hit
GTCGCCGACAACGAAACCATCTCCAAACTGC5030.10662766171685373No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4810.10196402641313448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)