FastQCFastQC Report
Wed 8 May 2024
EGAF00007962610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493453
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23740.481099517076601No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22530.4565784380680632No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18500.3749090592214456No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16710.33863407457245165No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15820.3205979090207173No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14520.29425294810245356No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11820.23953649081067496No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11430.23163300253519586No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10980.22251359298656612No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10670.2162313330752878No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10610.21501541180213718No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10220.20711192352665808No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9580.1941420966130513No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9320.18887310442939853No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8290.16799978924031267No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8140.1649599860574361No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7440.15077423787067867No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7080.14347871023177486No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6970.1412495212309987No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6800.1378044109570719No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6710.13598052904734595No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6680.13537256841077064No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5910.11976824540533748No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT5890.11936293831428728No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5600.11348598549405921No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5570.11287802485748388No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5510.11166210358433326No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5500.11145945003880814No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5430.11004087522013242No Hit
GTTCGGCAGTACCGGACGTTCGCCTTTAACGTCCATACGGAACT5360.10862230040145668No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5290.10720372558278093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)