FastQCFastQC Report
Wed 8 May 2024
EGAF00007962611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493453
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31810.6446409283153614No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23260.47137214689139595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18620.3773409017677469No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18300.3708559883109435No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17560.35585962594208564No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15470.31350503492733856No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13450.2725690187312672No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12480.25291162481533197No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12280.24885855390482983No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12180.2468320184495788No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11820.23953649081067496No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11380.2306197348075703No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11050.22393216780524183No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10350.20974641961848442No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9450.19150760052122492No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9390.19029167924807427No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9140.18522534060994664No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9100.1844147264278462No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8850.17934838778971857No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8830.17894308069866838No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8210.1663785608761118No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7830.15867772614615777No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7320.1483423953243774No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7110.14408667086835017No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6780.1373991038660217No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6610.1339539935920949No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6600.1337513400465698No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6230.12625315886214086No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6060.12280804858821408No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6050.12260539504268897No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5770.116931095767986No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5670.11490456031273495No Hit
GTCGCCGACAACGAAACCATCTCCAAACTGC5450.11044618231118263No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5400.10943291458355711No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5090.10315065467227881No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5020.10173207985360308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)