FastQCFastQC Report
Wed 8 May 2024
EGAF00007962612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479002
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23860.4981190057661554No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21620.45135510916447114No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18890.3943616101811684No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17150.3580360833566457No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15970.33340153068254413No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13840.28893407543183536No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11400.23799483091928633No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11210.23402825040396488No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11100.23173180905298935No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10590.22108467188028444No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10240.21377781303627122No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10230.213569045640728No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9460.197493956183899No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8660.18079256454044032No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7770.16221226633709254No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7470.15594924447079553No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7420.15490540749307935No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7190.15010375739558499No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7060.14738978125352295No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6860.14321443334265826No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG6600.1377864810585342No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6230.13006208742343456No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6020.12567797211702664No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT5960.12442536774376724No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5830.1217113916017052No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5830.1217113916017052No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5650.11795357848192702No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5470.1141957653621488No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5280.11022918484682735No Hit
GTTCGGCAGTACCGGACGTTCGCCTTTAACGTCCATACGGAACT5220.10897658047356797No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5210.10876781307802472No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5000.10438369777161682No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4810.10041711725629539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)