FastQCFastQC Report
Wed 8 May 2024
EGAF00007962613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479002
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40080.8367397213372805No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30920.6455087870196784No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21670.4523989461421873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18380.38371447300846345No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18250.3810004968664014No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17480.3649254074095724No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14790.30876697800844255No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13670.2853850297076004No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12900.2693099402507714No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12120.25302608339839916No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11930.2490595028830777No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11830.2469718289276454No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11310.23611592435939724No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11210.23402825040396488No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9570.1997903975348746No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9260.19331860827303435No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9210.19227477129531817No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8730.18225393630924297No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8370.17473831006968654No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8330.17390324048751363No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7880.1645087076880681No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7630.15928952279948727No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7400.1544878727019929No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6830.14258813115602859No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6640.13862155064070714No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6490.13549003970755863No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6370.13298483096103983No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6100.12734811128137252No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6050.12630427430365634No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5940.1240078329526808No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5500.1148220675487785No Hit
GTCGCCGACAACGAAACCATCTCCAAACTGC5220.10897658047356797No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5180.10814151089139502No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5040.10521876735378975No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4900.1022960238161845No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4900.1022960238161845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)