FastQCFastQC Report
Wed 8 May 2024
EGAF00007962615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518206
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40060.7730516435548798No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22850.44094433487840745No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13740.2651455212791824No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11270.2174810789531576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8730.16846582247214428No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8620.1663431145143051No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8190.15804525613366113No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8180.15785228268294849No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7670.14801063669660328No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6710.1294851854281888No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6680.12890626507605082No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6140.11848569873756769No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5830.1125035217654755No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5230.10092511472271645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)