FastQCFastQC Report
Wed 8 May 2024
EGAF00007962617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497242
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42110.8468713423242606No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37130.7467189014604558No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22330.4490771093350924No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12720.2558110537726097No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10770.21659473656690303No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7870.15827303405585208No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7620.15324530108076148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7530.15143531720972886No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.13856432079349693No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6400.12870996416231933No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6100.12267668459221062No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5950.11966004480715628No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5460.1098056881759787No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5150.10357129928686637No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5140.10337018996786274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)