FastQCFastQC Report
Wed 8 May 2024
EGAF00007962619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515817
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37740.731654831073811No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23630.45810820504171057No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12940.25086416306558335No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11580.22449822320706764No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.18456157900961No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8570.1661441945496174No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8440.16362392088667105No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8300.16090978001888268No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7230.14016598910078576No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7040.1364825122087872No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6600.12795235519573803No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6570.12737075358121194No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5940.11515711967616422No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5550.10759629868732515No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5320.10313735297595852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)