FastQCFastQC Report
Wed 8 May 2024
EGAF00007962621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503438
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41090.8161878920542351No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40400.8024821328544925No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22670.4503037116784987No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12990.25802581449950146No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10390.206380924761341No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7900.1569210111274874No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7760.15414013244927877No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7090.14083164163213743No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6970.13844803133653003No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6460.12831768758019857No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5980.11878324639776894No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5840.1160023677195603No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5220.10368704785892206No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5100.10130343756331464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)