FastQCFastQC Report
Wed 8 May 2024
EGAF00007962622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540321
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10140.1876662206355111No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9040.16730795212475547No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTACAA8190.15157656282098975No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8130.15046611181131217No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6050.11197047680915605No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6020.11141525130431723No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5600.10364209423657418No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5460.10105104188065984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)