FastQCFastQC Report
Wed 8 May 2024
EGAF00007962623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540321
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20230.37440706542962426No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11260.20839463948282597No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9160.16952885414411062No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9020.16693780178819628No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCC8440.15620344202797964No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8160.15102133731615094No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7340.13584517351722403No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6530.12085408488657669No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.11733765668926434No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5830.10789882310700491No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5510.10197641772205782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)