FastQCFastQC Report
Wed 8 May 2024
EGAF00007962624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517181
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9440.1825279737654709No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8440.1631923833242134No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8270.1599053329491996No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTACAA7980.15429801172123492No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6110.11814045759608338No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5530.10692581514015402No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5450.10537896790485343No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5390.10421883247837799No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5230.10112513800777678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)