FastQCFastQC Report
Wed 8 May 2024
EGAF00007962625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517181
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42990.8312370330696603No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19100.36930977742801846No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10880.21037122400088168No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8200.15855184161831157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8200.15855184161831157No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCC8080.15623157076536068No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6750.1305152354784882No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6460.12490791425052353No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6320.12220093158874747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5570.10769923875780434No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5380.1040254765739654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)