FastQCFastQC Report
Wed 8 May 2024
EGAF00007962626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539210
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9910.18378739266704996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9200.1706199810834369No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTACAA8020.14873611394447434No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7680.14243059290443427No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6300.11683759574191872No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6110.11331392221954342No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5650.10478292316537156No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5630.10441201016301625No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5580.10348472765712802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)