FastQCFastQC Report
Wed 8 May 2024
EGAF00007962627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539210
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19660.3646074813152575No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11420.21179132434487488No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9570.17748187162700987No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9400.17432911110698987No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8880.16468537304575212No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCC8290.15374343947627084No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7450.13816509337734834No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7010.1300050073255318No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6870.1274086163090447No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6020.11164481370894457No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5540.10274290165241742No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5530.10255744515123978No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5440.10088833664064095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)