FastQCFastQC Report
Wed 8 May 2024
EGAF00007962628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524918
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10090.19222049920178008No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9460.1802186246232745No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8070.15373829817228596No Hit
AGCGTCCGGGTTGCAGGACGCCAGCCAGTCAGCATCCTGTACAA7470.14230794143085204No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6290.1198282398393654No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5790.11030294255483715No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5560.10592130580395413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)