FastQCFastQC Report
Wed 8 May 2024
EGAF00007962629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524918
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43800.8344160421246747No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19650.37434418328196023No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11500.21908183754414975No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9400.17907558894913111No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8120.15469082790073876No Hit
CTGATCACTCCGACCGCAGATGGTCAGACCC7660.1459275543989728No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7160.13640225711444454No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6690.127448477666988No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6540.12459088848162951No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5360.10211118689014284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)