FastQCFastQC Report
Wed 8 May 2024
EGAF00007962631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506615
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28400.5605834805522932No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20410.40287002950958817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19090.3768147409768759No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16430.324309386812471No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14950.2950958814879149No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14110.2785152433307344No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13470.26588237616335875No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13280.26213199372304413No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13050.2575920570847685No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12980.2562103372383368No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11370.2244307807704075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11350.22403600367142704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10590.2090344739101685No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9820.19383555559941967No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8750.17271498080396358No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8490.1675828785172172No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8290.16363510752741234No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8020.15830561669117574No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7980.15751606249321476No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7800.15396306860239037No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7670.1513970174590172No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7140.1409354243360343No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6960.13738243044520987No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6600.1302764426635611No Hit
ATCCGTCCGCGCCGTAACACCGAGAAAGTCG6260.12356523198089278No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6240.1231704548819123No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5930.11705140984771473No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5690.11231408465994888No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5610.11073497626402692No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5360.10580026252677083No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5320.10501070832880985No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5260.10382637703186838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)