FastQCFastQC Report
Wed 8 May 2024
EGAF00007962633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487284
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44230.9076842252156853No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26670.5473194276848818No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19400.3981251180010015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17850.3663161523875194No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16420.3369698163699198No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14210.29161638797908407No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13200.27088925554707316No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12640.2593969840996216No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12050.24728905525319939No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12010.24646817872123855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11970.2456473021892777No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11650.2390802899335911No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10970.225125388890257No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10260.2105548304479523No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7910.1623283341952537No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7380.15145172014677272No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7350.1508360627478021No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7200.147757775752949No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7190.1475525566199588No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7070.1450899270240763No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6990.14344817396015466No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6460.1325715599116737No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6400.13134024511373246No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6320.1296984920498108No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5900.12107928846422211No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5750.11800100146936898No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5590.11471749534152569No Hit
ATCCGTCCGCGCCGTAACACCGAGAAAGTCG5570.11430705707554525No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5320.1091765787507901No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5070.10404610042603492No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5050.10363566216005451No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5050.10363566216005451No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5050.10363566216005451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)