FastQCFastQC Report
Wed 8 May 2024
EGAF00007962635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506690
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29140.5751050938443625No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20170.39807377291835244No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18640.3678777951015414No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15440.30472280881801495No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14580.28774990625431723No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14080.27788193964751623No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13860.2735400343405238No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13330.2630799897373147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13000.25656713177682605No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12750.25163314847342555No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12020.2372259172274961No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11960.23604176123467996No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10650.21018768872486135No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10170.2007144407823324No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8620.17012374430124927No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8450.16676863565493694No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8270.16321616767648858No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8070.15926898103376816No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7920.1563085910517279No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7910.15611123171959185No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7620.1503878110876473No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7510.14821685843415106No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6570.12966508121336517No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6410.12650733189918884No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6140.12117862993151632No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6130.1209812705993803No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6100.12038919260297225No Hit
ATCCGTCCGCGCCGTAACACCGAGAAAGTCG5700.11249481931753143No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5600.11052122599617123No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5470.10795555467840298No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5420.10696875801772286No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5300.10460044603209064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)