FastQCFastQC Report
Wed 8 May 2024
EGAF00007962637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493659
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43550.8821879070370439No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28160.5704342471220012No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20650.41830494329081414No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18180.3682704052797579No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17160.34760836933996947No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14340.29048391703584864No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13540.27427839865170084No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13110.26556793252022143No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12710.25746517332814756No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12700.2572626043483457No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12560.25442663863111986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11260.22809267125687974No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11050.22383872268104096No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9870.199935583064423No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8120.16448601159909979No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7940.16083976996266652No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7790.15780123526563883No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7780.157598666285837No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7490.1517241658715834No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7390.14969847607356493No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7360.14909076913415942No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6740.1365314923864449No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6420.1300492850327858No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5970.12093368094170268No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5910.11971826706289158No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5840.11830028420427867No Hit
ATCCGTCCGCGCCGTAACACCGAGAAAGTCG5700.11546431848705281No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5490.11121036991121401No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5420.10979238705260108No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5080.1029050417393383No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5070.10270247275953645No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4940.10006907602211244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)