FastQCFastQC Report
Wed 8 May 2024
EGAF00007962641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488459
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42980.879910084572093No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20100.41149820148671634No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6700.13716606716223878No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6690.13696134168886231No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5530.11321318677719111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)