FastQCFastQC Report
Wed 8 May 2024
EGAF00007962643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509748
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21280.41746117689525025No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9850.1932327346061191No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7530.14772004990701287No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6830.13398777435124806No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6340.12437518146221271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)