FastQCFastQC Report
Wed 8 May 2024
EGAF00007962647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475394
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27750.583726340677417No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13400.28187145820098697No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11960.2515807940361048No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11310.23790792479501216No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11220.236014758284707No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8020.16870217125163547No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7060.14850839514171402No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7050.1482980433072357No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6650.13988396992810176No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6620.1392529144246667No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6470.1360976369074915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6320.13294235939031623No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6150.1293663782041843No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6140.12915602636970597No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5780.12158336032848543No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4960.10433450990126085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)