FastQCFastQC Report
Wed 8 May 2024
EGAF00007962649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454933
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40210.8838664154941497No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25830.5677759142555058No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13340.2932299921087281No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11200.24619009832217054No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10540.23168246752818547No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10480.23036359200145953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6660.1463951834665764No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6640.1459555582910011No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6370.1400206184207345No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6130.13474511631383085No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6120.13452530372604318No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6080.13364605337489258No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5990.1316677400848037No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5680.12485354986338647No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5350.11759973446639396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)