FastQCFastQC Report
Wed 8 May 2024
EGAF00007962651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473340
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26870.5676680610132252No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14290.3018971563780792No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11970.2528837622005324No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11790.24908099885917098No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10620.22436303714032196No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8600.18168758186504416No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7560.15971606033717836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6910.14598385938226222No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6830.14429374234165715No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6810.14387121308150588No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6310.13330798157772428No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6260.1322516584273461No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6110.1290826889762116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6070.12823763045590905No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5950.12570245489500148No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.11260404783031223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)