FastQCFastQC Report
Wed 8 May 2024
EGAF00007962653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461674
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38760.8395534511365161No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28830.624466614970737No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13570.2939303491208082No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11150.2415124091891681No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10970.23761355415293042No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10350.22418416458366727No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6740.14599046080134467No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6280.13602672015318168No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6190.13407729263506285No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6160.13342748346235656No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6150.1332108804047878No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5870.12714599479286248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5770.12497996421717489No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5550.12021469695066216No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5550.12021469695066216No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4630.10028721565433618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)