FastQCFastQC Report
Wed 8 May 2024
EGAF00007962656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503893
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA48300.9585368322243015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA45960.9120984018432485No Hit
GGTGCGTTTACGTACCGGCTGACGGCGCTGCGGCAGCGGGGTCG25390.5038768151174952No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT20270.40226794180510544No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16150.32050455156154184No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15970.31693236460915314No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14570.28914868831279655No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC13170.26136501201644No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12760.2532283639582213No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11960.23735197750316042No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11440.2270323263073708No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10260.203614656286156No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10090.20024092416445557No Hit
CTGCAGCTCGCGAGCGCTGATGTAACCATCGCCATCTTCATCGA9970.1978594661961964No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG9450.18753981500040684No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8320.16511441913263333No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8170.1621375966723094No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8110.16094686768817984No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7560.15003185200032548No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC7340.14566584572518373No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7240.1436812974183011No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7080.14050602012728894No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6680.1325678268997585No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6500.12899563994736976No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6150.12204972087328063No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6040.11986671773570975No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.11827907909020367No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5750.1141115276457502No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5610.11133316001611454No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5540.1099439762012967No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCGGAC5470.10855479238647887No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5180.10279960229651931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)