FastQCFastQC Report
Wed 8 May 2024
EGAF00007962660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529662
Total Bases23.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17010.3211482039489335No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10830.20447002050364194No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9420.17784926991175506No Hit
GGTGCCAGCCGCGCCACGAGGACCACGCAGGCCCAGCGGACCAG9220.17407327691999805No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8760.16538849303895692No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8320.1570813084570915No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7430.1402781396437728No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5320.1004414135807364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)